Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dppA_8Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (536 aa)    
Predicted Functional Partners:
dppC
Dipeptide ABC transporter permease DppB; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.973
gsiA_20
Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  0.938
gsiA_21
Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.913
dppA_6
Peptide ABC transporter substrate-binding protein; DppABCDF is involved in the transport of dipeptides; also binds heme and mediates chemotaxis to dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.901
sapC
Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.765
dppB_1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.709
sapB_1
Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.703
ddpB
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.676
ddpC_2
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.585
ddpC_3
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.550
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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