Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AOE39867.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)    
Predicted Functional Partners:
nadR_2
Trifunctional NAD biosynthesis/regulator protein NadR; Catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; catalyzes the formation of nicotinamide mononucleotide from nicotinamide riboside; also has a regulatory function; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.846
abgR_2
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
    0.580
AOE41743.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.473
AOE39541.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.445
cstA_1
Carbon starvation protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.415
AOE38872.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.409
abgB_2
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.405
iaaH
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.405
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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