Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AOE39913.1Pilus assembly protein PilL; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)    
Predicted Functional Partners:
AOE39914.1
pilM family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
AOE39915.1
Type IVB pilus formation outer membrane protein, R64 PilN family; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.759
wrbA
NAD(P)H:quinone oxidoreductase, type IV; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.535
AOE41901.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.509
AOE39918.1
Pilus assembly protein PilR; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.499
ygaU_2
Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.496
ygaU_1
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.496
AOE39912.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.494
AOE39919.1
Pilus assembly protein PilX; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.483
AOE39916.1
Pilus assembly protein PilP; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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