Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BEE12_09620Hypothetical protein; Internal stop; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)    
Predicted Functional Partners:
AOE41637.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.667
AOE41615.1
GPO family capsid scaffolding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.612
AOE41627.1
Baseplate assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.607
AOE41623.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.600
AOE41616.1
Phage major capsid protein, P2 family; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.593
AOE41624.1
Phage virion morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.579
AOE41619.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.522
AOE41618.1
Head completion/stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.515
AOE39098.1
Replication protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.514
AOE41610.1
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.514
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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