STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhuFHydroxamate siderophore iron reductase FhuF; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
tonB_2
TonB system transport protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.827
exbB
tonB-system energizer ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.785
exbD
Citrate-proton symporter; Is involved in the uptake of citrate and the transport of protons into the cell; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.727
pgpB_1
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
yncE_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.699
fhuD
Iron-hydroxamate transporter substrate-binding subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.699
yncE_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.679
AOE38711.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.677
yncE_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.675
fepB
Fe2+-enterobactin ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.671
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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