STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadWAraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)    
Predicted Functional Partners:
rhaR
Transcriptional regulator; Activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.832
AOE40392.1
Serine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.823
ureR
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.750
cycA_3
Ethanolamine permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.695
rafR
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.680
yiiS
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.601
dgdA
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
AOE39833.1
Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
aaeB_4
Fusaric acid resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
tetD_2
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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