rumB protein (Pantoea agglomerans) - STRING interaction network

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rumB

23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (396 aa)

Predicted Functional Partners:

ybjO

0.664

tmcA_3

0.508

potG

0.477

ydcV

0.470

rlmL_1

0.432

Your Current Organism:

Pantoea agglomerans

NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
potG	rumB	BEE12_13275	BEE12_13290	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.477
potG	ybjO	BEE12_13275	BEE12_13285	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
potG	ydcV	BEE12_13275	BEE12_13280	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
rlmL_1	rumB	BEE12_13620	BEE12_13290	23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.432
rumB	potG	BEE12_13290	BEE12_13275	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
rumB	rlmL_1	BEE12_13290	BEE12_13620	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the methyltransferase superfamily.	0.432
rumB	tmcA_3	BEE12_13290	BEE12_01805	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Esterase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
rumB	ybjO	BEE12_13290	BEE12_13285	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
rumB	ydcV	BEE12_13290	BEE12_13280	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
tmcA_3	rumB	BEE12_01805	BEE12_13290	Esterase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.508
ybjO	potG	BEE12_13285	BEE12_13275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
ybjO	rumB	BEE12_13285	BEE12_13290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.664
ybjO	ydcV	BEE12_13285	BEE12_13280	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
ydcV	potG	BEE12_13280	BEE12_13275	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Part of the PotFGHI ATP-dependent putrescine transporter; frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ydcV	rumB	BEE12_13280	BEE12_13290	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	23S rRNA (uracil(747)-C(5))-methyltransferase; RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.470
ydcV	ybjO	BEE12_13280	BEE12_13285	Putrescine ABC transporter permease PotI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620

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