STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudJ_2NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Nudix hydrolase family. NudJ subfamily. (157 aa)    
Predicted Functional Partners:
rluE
23S rRNA pseudouridylate synthase; Catalyzes the formation of pseudouridine from uracil-2457 in 23S ribosomal RNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.875
mnmA_3
tRNA 2-thiouridine(34) synthase MnmA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
hflD
Lysogenization regulator HflD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.647
ycgL
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.552
icd_2
NADP-dependent isocitrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.507
purB_1
Adenylosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
mltF_2
Lytic transglycosylase F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.461
yecM
Metalloprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
hisE
Bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase; Catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribosyl)-ATP and the subsequent formation of 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imidazole-4- carboxamide from 1-(5-phosphoribosyl)-AMP in histidine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; In the N-terminal section; belongs to the PRA-CH family.
     
 0.402
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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