Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AOE40982.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (121 aa)    
Predicted Functional Partners:
AOE40983.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.667
AOE40992.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
uidB
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
AOE41587.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.497
AOE41625.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
AOE41242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.451
AOE40996.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
uvsE
UV damage endonuclease UvsE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
frc
acyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.
  
    0.425
AOE41308.1
Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.410
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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