Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pknBTransporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)    
Predicted Functional Partners:
stp_1
Serine/threonine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.935
AOE41066.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.866
AOE40999.1
Serine/threonine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.842
AOE41065.1
Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.837
AOE41068.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.779
AOE40992.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.761
AOE41067.1
Type VI secretion system protein ImpL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.731
AOE41063.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.670
stp_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.594
AOE41041.1
Type III secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.589
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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