STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stp_1Serine/threonine phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)    
Predicted Functional Partners:
AOE41065.1
Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.951
pknB
Transporter; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
AOE41066.1
Type VI secretion-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.871
spkD
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.856
AOE41068.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.845
AOE41067.1
Type VI secretion system protein ImpL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.806
AOE41063.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.749
stp_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.727
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.689
AOE40166.1
Molecular chaperone DnaJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.639
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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