STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygdR_4Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa)    
Predicted Functional Partners:
ygdR_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.914
AOE41180.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.762
AOE39031.1
DUF1328 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.503
yjbJ_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0337 (CsbD) family.
   
    0.443
AOE40956.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.443
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.