STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_1Transcriptional activator RhaS; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
rhaR
Transcriptional regulator; Activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.860
araC_1
DNA-binding transcriptional regulator AraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.774
marA_2
DNA-binding transcriptional regulator RamA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.772
rob_2
Right oriC-binding transcriptional activator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.765
tetD_3
Right origin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.760
tetD_1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.748
AOE41395.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.712
adaA
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.671
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.664
rhaB_1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.584
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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