STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaT_1Rhamnose:proton symporter; Transports L-rhamnose and L-lyxose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)    
Predicted Functional Partners:
rhaB_1
Rhamnulokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.612
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.610
tsgA
MFS transporter TsgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
rhaR
Transcriptional regulator; Activates the expression of rhaRS in response to L-rhamnose; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.532
rhaA_1
L-rhamnose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.525
ykoD
Molybdate ABC transporter ATP-binding protein ModF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.504
exuT_1
Involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.500
exuT_3
Involved in the transport of aldohexuronates; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.463
AOE38769.1
Enhanced serine sensitivity protein SseB; Enhances serine sensitivity caused by inhibition of homoserine dehydrogenase I; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.457
AOE41457.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.450
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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