sapC protein (Pantoea agglomerans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sapC

Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)

Predicted Functional Partners:

gsiA_10

0.997

sapB_1

0.987

gsiA_11

0.978

dppA_2

0.976

gsiA_21

0.959

gsiA_7

0.925

gsiA_2

0.916

gsiA_14

0.877

gsiA_20

0.851

gsiA_8

0.790

Your Current Organism:

Pantoea agglomerans

NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
dppA_2	gsiA_11	BEE12_17250	BEE12_17290	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
dppA_2	gsiA_20	BEE12_17250	BEE12_07280	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.573
dppA_2	gsiA_21	BEE12_17250	BEE12_07275	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
dppA_2	sapB_1	BEE12_17250	BEE12_17255	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
dppA_2	sapC	BEE12_17250	BEE12_17285	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
gsiA_10	gsiA_11	BEE12_17295	BEE12_17290	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
gsiA_10	sapB_1	BEE12_17295	BEE12_17255	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
gsiA_10	sapC	BEE12_17295	BEE12_17285	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
gsiA_11	dppA_2	BEE12_17290	BEE12_17250	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
gsiA_11	gsiA_10	BEE12_17290	BEE12_17295	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
gsiA_11	sapB_1	BEE12_17290	BEE12_17255	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
gsiA_11	sapC	BEE12_17290	BEE12_17285	Peptide ABC transporter ATP-binding protein; Involved in resistance to antimibial peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
gsiA_14	gsiA_20	BEE12_16530	BEE12_07280	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.543
gsiA_14	sapB_1	BEE12_16530	BEE12_17255	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.715
gsiA_14	sapC	BEE12_16530	BEE12_17285	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
gsiA_2	gsiA_20	BEE12_02405	BEE12_07280	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.551
gsiA_2	sapB_1	BEE12_02405	BEE12_17255	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
gsiA_2	sapC	BEE12_02405	BEE12_17285	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antimicrobial peptide ABC transporter permease SapC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
gsiA_20	dppA_2	BEE12_07280	BEE12_17250	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Peptide ABC transporter substrate-binding protein SapA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
gsiA_20	gsiA_14	BEE12_07280	BEE12_16530	Dipeptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543

page 1 of 3

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About