STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cls_2Cardiolipin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phospholipase D family. Cardiolipin synthase subfamily. (486 aa)    
Predicted Functional Partners:
ybhO_4
Cardiolipin synthase B; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.928
ybhO_1
Beta-glucosidase; Catalyzes the synthesis of cardiolipin (CL) (diphosphatidylglycerol) from phosphatidylglycerol (PG) and phosphatidylethanolamine (PE); Belongs to the phospholipase D family. Cardiolipin synthase subfamily. ClsC sub-subfamily.
  
  
 
0.927
pgpA
Phosphatidylglycerophosphatase A; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).
     
 0.907
pgpB_1
Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.904
AOE38789.1
Acid phosphatase AphA; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.901
yciU
Highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0263 family.
       0.634
hns_1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the histone-like protein H-NS family.
 
     0.494
yciI
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.490
hns_2
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the histone-like protein H-NS family.
 
     0.450
AOE39733.1
Lysophospholipase; Lecithinase B; catalyzes the conversion of 1-lysophosphatidylcholine to glycerophosphocholine; can also hydrolyze 2-acyl glycerophosphoethanolamine and other substrates; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.418
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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