STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shlB_1AT-2 family transporter; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)    
Predicted Functional Partners:
AOE40926.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.830
BEE12_06180
Hemolysin activator protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
AOE39054.1
Protein CsuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.706
AOE39896.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.667
AOE40351.1
Chromophore lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.642
AOE40396.1
DUF4810 domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
fhuF
Hydroxamate siderophore iron reductase FhuF; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.532
AOE41928.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.515
AOE39898.1
Pilus assembly protein PapC; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.504
htrE_1
Fimbrial chaperone protein StbB; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.504
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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