STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQL46389.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)    
Predicted Functional Partners:
KQL50213.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
KQL49902.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
KQL46390.1
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.501
KQL49898.1
Spore gernimation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.487
KQL43952.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
KQL49900.1
Spore gernimation protein GerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.427
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.426
Your Current Organism:
Brevibacillus choshinensis
NCBI taxonomy Id: 54911
Other names: ATCC 51359, B. choshinensis, Bacillus choshinensis, CIP 103838, DSM 8552, IFO 15518, JCM 8505, LMG 15968, LMG:15968, NBRC 15518, NCIMB 13345, NRRL B-23247, strain HPD52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.