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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KZE41987.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (402 aa)    
Predicted Functional Partners:
yqfC
Stage IV sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
KZE46660.1
Sporulation protein YabP; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.834
KZE53178.1
Sporulation integral membrane protein YlbJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.833
KZE49453.1
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.820
KZE49498.1
Stage III sporulation protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.812
KZE46491.1
sigma-E processing peptidase SpoIIGA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.807
phoH
Phosphate starvation-inducible protein PhoH; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
spoIIIAA
Stage III sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.781
spoIIIAB
Stage III sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.776
spoIIIAG
Stage III sporulation protein AG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
Your Current Organism:
Brevibacillus parabrevis
NCBI taxonomy Id: 54914
Other names: ATCC 10027, B. parabrevis, Bacillus parabrevis, CIP 103840, DSM 8376, IFO 12334, JCM 8506, LMG 15971, LMG:15971, NBRC 12334, NCIMB 13346, NRRL NRS-605, NRRL NRS-815
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