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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppB_1Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
oppC_1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.993
oppD_1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
 
  0.978
oppA_1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.932
dppC_3
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
KZE54135.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
dppC_2
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
KZE52288.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
dppC_1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
oppF_1
Peptide ABC transporter ATP-binding protein; With OppABCD is involved in the transport of oligopeptides; OppF and OppD are ATP-binding proteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.905
KZE54056.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.888
Your Current Organism:
Brevibacillus parabrevis
NCBI taxonomy Id: 54914
Other names: ATCC 10027, B. parabrevis, Bacillus parabrevis, CIP 103840, DSM 8376, IFO 12334, JCM 8506, LMG 15971, LMG:15971, NBRC 12334, NCIMB 13346, NRRL NRS-605, NRRL NRS-815
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