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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alaSalanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (882 aa)    
Predicted Functional Partners:
KZE49454.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
KZE45032.1
Flagellar protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.949
alaS_2
alanyl-tRNA editing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.933
KZE46898.1
Crossover junction endodeoxyribonuclease RuvA; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
  
 0.923
pheT
phenylalanine--tRNA ligase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
 
 0.909
KZE55484.1
Pilus assembly protein PilF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.902
KZE49356.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.885
KZE44363.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.885
KZE48346.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.884
KZE43358.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.884
Your Current Organism:
Brevibacillus parabrevis
NCBI taxonomy Id: 54914
Other names: ATCC 10027, B. parabrevis, Bacillus parabrevis, CIP 103840, DSM 8376, IFO 12334, JCM 8506, LMG 15971, LMG:15971, NBRC 12334, NCIMB 13346, NRRL NRS-605, NRRL NRS-815
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