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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gerKA_1Spore gernimation protein KA; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)    
Predicted Functional Partners:
KZE44609.1
Spore gernimation protein GerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.926
spoVAD_1
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.780
gerKC_1
Spore gernimation protein GerC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.777
spoVAD_2
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.777
spoVAC
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
KZE45157.1
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.772
gpr
Peptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.770
spoIVB
SpoIVB peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
KZE46655.1
Stage V sporulation protein T; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
sigE
Sporulation sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.769
Your Current Organism:
Brevibacillus parabrevis
NCBI taxonomy Id: 54914
Other names: ATCC 10027, B. parabrevis, Bacillus parabrevis, CIP 103840, DSM 8376, IFO 12334, JCM 8506, LMG 15971, LMG:15971, NBRC 12334, NCIMB 13346, NRRL NRS-605, NRRL NRS-815
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