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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AV540_2567523S ribosomal RNA; Incomplete; too short partial abutting assembly gap; missing start and stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
KZE46842.1
Ribonuclease G; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.591
hisH
Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
    
  0.562
KZE41856.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
KZE51767.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.477
tpn_2
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.457
KZE42846.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.435
KZE54121.1
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.432
KZE42847.1
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.418
Your Current Organism:
Brevibacillus parabrevis
NCBI taxonomy Id: 54914
Other names: ATCC 10027, B. parabrevis, Bacillus parabrevis, CIP 103840, DSM 8376, IFO 12334, JCM 8506, LMG 15971, LMG:15971, NBRC 12334, NCIMB 13346, NRRL NRS-605, NRRL NRS-815
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