Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KNB74846.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)    
Predicted Functional Partners:
KNB74847.1
Phosphoribosylglycinamide formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
KNB68522.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.553
KNB74842.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.550
KNB74167.1
Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
KNB68520.1
Arabinose ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.532
KNB71780.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
KNB73797.1
S-layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.495
KNB74792.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
KNB69803.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.462
KNB72214.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.458
Your Current Organism:
Brevibacillus reuszeri
NCBI taxonomy Id: 54915
Other names: ATCC 51665, B. reuszeri, Bacillus reuszeri, CIP 104543, DSM 9887, IFO 15719, JCM 9170, LMG 16012, LMG:16012, NBRC 15719, strain H.W. Reuszer Army strain 39
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