Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KNB74227.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)    
Predicted Functional Partners:
KNB73574.1
Nicotinate-nucleotide adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.698
KNB71347.1
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.563
KNB74226.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
KNB73744.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.515
KNB73355.1
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.466
KNB74225.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.444
KNB72506.1
Mannose-1-phosphate guanyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.433
KNB69338.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.419
KNB69702.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
KNB71797.1
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.417
Your Current Organism:
Brevibacillus reuszeri
NCBI taxonomy Id: 54915
Other names: ATCC 51665, B. reuszeri, Bacillus reuszeri, CIP 104543, DSM 9887, IFO 15719, JCM 9170, LMG 16012, LMG:16012, NBRC 15719, strain H.W. Reuszer Army strain 39
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