STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KNB71810.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)    
Predicted Functional Partners:
KNB70359.1
alanyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.925
KNB73538.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.916
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.912
gpmI
Phosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
 0.912
KNB68558.1
Histone deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.900
KNB71745.1
GMC family oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.878
KNB68918.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.878
KNB72288.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.871
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.865
KNB71888.1
Flagellar biosynthesis anti-sigma factor FlgM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.864
Your Current Organism:
Brevibacillus reuszeri
NCBI taxonomy Id: 54915
Other names: ATCC 51665, B. reuszeri, Bacillus reuszeri, CIP 104543, DSM 9887, IFO 15719, JCM 9170, LMG 16012, LMG:16012, NBRC 15719, strain H.W. Reuszer Army strain 39
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.