STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001636335_00061Unannotated protein. (729 aa)    
Predicted Functional Partners:
GCA_001636335_01861
Unannotated protein.
 
 0.971
GCA_001636335_02277
Unannotated protein.
 
 0.946
GCA_001636335_01129
Unannotated protein.
 
 0.823
recA
Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.807
polA
Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.774
GCA_001636335_01796
Unannotated protein.
  
 0.740
sbcD
Unannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
 0.649
leuS
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.638
GCA_001636335_03247
Unannotated protein.
  
 0.615
GCA_001636335_02989
Unannotated protein.
  
 
 0.599
Your Current Organism:
Bacillus horneckiae
NCBI taxonomy Id: 549687
Other names: B. horneckiae, Bacillus horneckiae Vaishampayan et al. 2010, Bacillus sp. As-14, MTCC 9535, NRRL B-59162, strain 1P01SC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.