STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CWS20_12240Unannotated protein; Belongs to the sigma-70 factor family. (218 aa)    
Predicted Functional Partners:
CWS20_12245
Unannotated protein.
  
    0.819
GCA_001636335_03412
Unannotated protein.
 
    0.788
CWS20_12250
Unannotated protein; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
  
    0.742
cysS
Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.667
rpoC
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.645
cysE
Unannotated protein.
       0.634
CWS20_26915
Unannotated protein.
  
 
 0.629
GCA_001636335_03426
Unannotated protein.
 
    0.628
GCA_001636335_00926
Unannotated protein.
  
 
 
 0.623
rpoB
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.622
Your Current Organism:
Bacillus horneckiae
NCBI taxonomy Id: 549687
Other names: B. horneckiae, Bacillus horneckiae Vaishampayan et al. 2010, Bacillus sp. As-14, MTCC 9535, NRRL B-59162, strain 1P01SC
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.