STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH44195.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (94 aa)    
Predicted Functional Partners:
OKH50804.1
RNA-binding protein hfq; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.691
OKH50551.1
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
OKH50560.1
Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.649
NIES30_13285
FAD-dependent oxidoreductase; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.608
OKH43983.1
Type 1 glutamine amidotransferase domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.608
OKH43477.1
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
  
 0.555
katG
Catalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily.
     
 0.493
OKH44194.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
fni
Type 2 isopentenyl-diphosphate Delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
   
 
  0.478
OKH45445.1
Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.478
Your Current Organism:
Phormidium tenue
NCBI taxonomy Id: 549789
Other names: P. tenue NIES-30, Phormidium tenue IAM M-40, Phormidium tenue NIES-30
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