Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIT68577.1 | SIT70456.1 | SAMN05428946_0384 | SAMN05428946_0609 | rsbT co-antagonist protein RsbR. | PAS domain S-box-containing protein. | 0.741 |
SIT68577.1 | SIT72146.1 | SAMN05428946_0384 | SAMN05428946_0826 | rsbT co-antagonist protein RsbR. | Response regulator receiver domain-containing protein. | 0.721 |
SIT68577.1 | SIT89643.1 | SAMN05428946_0384 | SAMN05428946_2449 | rsbT co-antagonist protein RsbR. | rsbT antagonist protein RsbS. | 0.575 |
SIT68577.1 | SIT89647.1 | SAMN05428946_0384 | SAMN05428946_2450 | rsbT co-antagonist protein RsbR. | Serine/threonine-protein kinase RsbT. | 0.813 |
SIT68577.1 | SIT89652.1 | SAMN05428946_0384 | SAMN05428946_2451 | rsbT co-antagonist protein RsbR. | sigma-B regulation protein RsbU (phosphoserine phosphatase). | 0.696 |
SIT68577.1 | SIT89671.1 | SAMN05428946_0384 | SAMN05428946_2455 | rsbT co-antagonist protein RsbR. | Serine phosphatase. | 0.906 |
SIT68577.1 | SIT91124.1 | SAMN05428946_0384 | SAMN05428946_2599 | rsbT co-antagonist protein RsbR. | rsbT co-antagonist protein RsbR. | 0.756 |
SIT68577.1 | SIT93063.1 | SAMN05428946_0384 | SAMN05428946_2935 | rsbT co-antagonist protein RsbR. | rsbT co-antagonist protein RsbR. | 0.704 |
SIT68577.1 | rsbW | SAMN05428946_0384 | SAMN05428946_2453 | rsbT co-antagonist protein RsbR. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.769 |
SIT68577.1 | spoIIAB | SAMN05428946_0384 | SAMN05428946_0126 | rsbT co-antagonist protein RsbR. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.731 |
SIT70456.1 | SIT68577.1 | SAMN05428946_0609 | SAMN05428946_0384 | PAS domain S-box-containing protein. | rsbT co-antagonist protein RsbR. | 0.741 |
SIT70456.1 | SIT72146.1 | SAMN05428946_0609 | SAMN05428946_0826 | PAS domain S-box-containing protein. | Response regulator receiver domain-containing protein. | 0.999 |
SIT70456.1 | SIT89643.1 | SAMN05428946_0609 | SAMN05428946_2449 | PAS domain S-box-containing protein. | rsbT antagonist protein RsbS. | 0.741 |
SIT70456.1 | SIT89647.1 | SAMN05428946_0609 | SAMN05428946_2450 | PAS domain S-box-containing protein. | Serine/threonine-protein kinase RsbT. | 0.776 |
SIT70456.1 | SIT89652.1 | SAMN05428946_0609 | SAMN05428946_2451 | PAS domain S-box-containing protein. | sigma-B regulation protein RsbU (phosphoserine phosphatase). | 0.786 |
SIT70456.1 | SIT89671.1 | SAMN05428946_0609 | SAMN05428946_2455 | PAS domain S-box-containing protein. | Serine phosphatase. | 0.786 |
SIT70456.1 | SIT91124.1 | SAMN05428946_0609 | SAMN05428946_2599 | PAS domain S-box-containing protein. | rsbT co-antagonist protein RsbR. | 0.741 |
SIT70456.1 | SIT93063.1 | SAMN05428946_0609 | SAMN05428946_2935 | PAS domain S-box-containing protein. | rsbT co-antagonist protein RsbR. | 0.741 |
SIT70456.1 | rsbW | SAMN05428946_0609 | SAMN05428946_2453 | PAS domain S-box-containing protein. | Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.776 |
SIT70456.1 | spoIIAB | SAMN05428946_0609 | SAMN05428946_0126 | PAS domain S-box-containing protein. | Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.776 |
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