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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_0331COGs: COG2823 periplasmic or secreted lipoprotein; InterPro IPR007055: IPR014004; KEGG: spl:Spea_0249 transport-associated; PFAM: transport-associated; SMART: Transport-associated and nodulation region; SPTR: A2V3E3 Transport-associated; PFAM: Putative phospholipid-binding domain. (191 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.877
Fbal_0334
LppC family lipoprotein; COGs: COG3107 Putative lipoprotein; InterPro IPR007443; KEGG: son:SO_0300 putative lipoprotein; PFAM: LppC family lipoprotein; SPTR: A2V3E0 LppC putative lipoprotein; PFAM: LppC putative lipoprotein.
  
    0.779
Fbal_0333
Protein of unknown function UPF0102; COGs: COG0792 endonuclease distantly related to Holliday junction resolvase; InterPro IPR003509; KEGG: aha:AHA_3896 hypothetical protein; PFAM: protein of unknown function UPF0102; SPTR: A0KPY4 UPF0102 protein AHA_3896; PFAM: Uncharacterised protein family UPF0102; TIGRFAM: conserved hypothetical protein TIGR00252.
     
 0.778
Fbal_0617
Protein of unknown function DUF903; InterPro IPR010305; KEGG: vha:VIBHAR_05819 hypothetical protein; PFAM: protein of unknown function DUF903; SPTR: P65297 Uncharacterized lipoprotein ygdR; PFAM: Bacterial protein of unknown function (DUF903).
  
    0.680
Fbal_0024
Peptidoglycan-binding lysin domain protein; InterPro IPR018392: IPR002482; KEGG: slo:Shew_3735 peptidoglycan-binding LysM; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: A2V469 Peptidoglycan-binding LysM; PFAM: LysM domain.
  
  
 0.617
bamE
SmpA/OmlA domain protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.611
rsmI
Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.572
Fbal_2490
Succinate dehydrogenase subunit D; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
     0.470
ftsB
Cell division protein FtsB; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.
  
     0.456
Fbal_0644
Catalase; COGs: COG0753 Catalase; InterPro IPR002226: IPR018028: IPR010582; KEGG: saz:Sama_2941 catalase; PFAM: Catalase related subgroup; Catalase domain protein; PRIAM: Catalase; SPTR: Q27710 Catalase; PFAM: Catalase; Catalase-related immune-responsive; Belongs to the catalase family.
   
  
 0.447
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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