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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_0760Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143: IPR001917; KEGG: sse:Ssed_0205 putative multidrug resistance efflux pump; PFAM: secretion protein HlyD family protein; SPTR: A3XTJ0 Multidrug resistance efflux pump; PFAM: HlyD family secretion protein. (407 aa)    
Predicted Functional Partners:
Fbal_1204
Major facilitator superfamily MFS_1; InterPro IPR001463: IPR011701; KEGG: sse:Ssed_4203 hypothetical protein; PFAM: major facilitator superfamily MFS_1; SPTR: A3EUZ1 Permease of the major facilitator superfamily; PFAM: Major Facilitator Superfamily.
 
 
 0.832
Fbal_0761
KEGG: sse:Ssed_0204 major facilitator superfamily permease; SPTR: A3USP6 Permease of the major facilitator superfamily; PFAM: Protein of unknown function (DUF3302).
       0.797
Fbal_1763
COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: mei:Msip34_1158 RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; SPTR: A3L001 Major intrinsic multiple antibiotic resistance efflux outer membrane protein OprM; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.769
Fbal_1189
COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010131; KEGG: shm:Shewmr7_2115 RND efflux system outer membrane lipoprotein; PFAM: outer membrane efflux protein; SPTR: A3UM06 Putative outer membrane protein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.767
Fbal_1648
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: sse:Ssed_3870 Co/Zn/Cd efflux system component; PFAM: outer membrane efflux protein; SPTR: A3WJY4 Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
  
 
 0.734
Fbal_0604
Colicin V processing peptidase; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterPro IPR003439: IPR005074: IPR001140: IPR003593: IPR 017940; KEGG: son:SO_A0049 toxin secretion ABC transporter, ATP-binding subunit/permease protein, putative; PFAM: ABC transporter related; peptidase C39 bacteriocin processing; ABC transporter transmembrane region; SMART: AAA ATPase; SPTR: A2UV24 ABC transporter related; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family.
  
 
 0.713
Fbal_3456
COGs: COG1538 Outer membrane protein; InterPro IPR003423; KEGG: slo:Shew_0411 outer membrane efflux protein; PFAM: outer membrane efflux protein; SPTR: A2UWG2 Outer membrane efflux protein; PFAM: Outer membrane efflux protein.
 
 
 0.649
Fbal_0762
InterPro IPR020449: IPR000005: IPR018060; KEGG: shl:Shal_0273 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; SPTR: A3USP7 Putative uncharacterized protein; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family.
 
    0.631
Fbal_3287
Type I secretion outer membrane protein, TolC family; COGs: COG1538 Outer membrane protein; InterPro IPR003423: IPR010130; KEGG: spl:Spea_3563 outer membrane channel protein; PFAM: outer membrane efflux protein; SPTR: A2V565 Type I secretion outer membrane protein, TolC family; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family.
  
 
 0.590
Fbal_0759
Diacylglycerol kinase catalytic region; Probably phosphorylates lipids; the in vivo substrate is unknown; Belongs to the diacylglycerol/lipid kinase family. YegS lipid kinase subfamily.
       0.552
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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