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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_0771Hemerythrin HHE cation binding domain protein; COGs: COG3945 conserved hypothetical protein; InterPro IPR012312; KEGG: sse:Ssed_1182 hemerythrin HHE cation binding domain-containing protein; PFAM: Hemerythrin HHE cation binding domain protein; SPTR: A2UZY5 Hemerythrin HHE cation binding region; PFAM: Hemerythrin HHE cation binding domain. (184 aa)    
Predicted Functional Partners:
ung
Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.
       0.592
Fbal_3315
COGs: COG4519 conserved hypothetical protein; InterPro IPR017162; KEGG: vsp:VS_2299 hypothetical protein; PFAM: Uncharacterised conserved protein UCP037266; SPTR: A3UUP8 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2131).
  
     0.540
Fbal_1366
FeoA family protein; InterPro IPR007167; KEGG: son:SO_1783 ferrous iron transport protein A; PFAM: FeoA family protein; SPTR: A2V0Z0 FeoA; PFAM: FeoA domain.
  
     0.503
Fbal_0942
KEGG: slo:Shew_2645 hypothetical protein; SPTR: A2UVK5 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3549).
  
     0.497
Fbal_0504
COGs: COG3264 Small-conductance mechanosensitive channel; InterPro IPR006685: IPR006686; KEGG: shw:Sputw3181_0650 MscS mechanosensitive ion channel; PFAM: MscS Mechanosensitive ion channel; SPTR: A2UUQ9 MscS Mechanosensitive ion channel; PFAM: Mechanosensitive ion channel.
  
     0.479
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.462
Fbal_1162
Porin Gram-negative type; COGs: COG3203 Outer membrane protein (porin); InterPro IPR001702; KEGG: saz:Sama_3336 outer membrane porin, putative; PFAM: porin Gram-negative type; SPTR: A2V3C9 Porin, Gram-negative type; PFAM: Gram-negative porin.
  
     0.428
Fbal_2281
Type III restriction protein res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR011545: IPR001650: IPR006935: IPR014001: IPR 014021; KEGG: aha:AHA_2623 putative helicase, ATP-dependent; PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: P33919 Uncharacterized protein yejH; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit.
  
     0.427
Fbal_3594
KEGG: saz:Sama_3617 hypothetical protein; SPTR: A2V3M3 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3306).
  
     0.421
Fbal_1825
Sulfur relay protein TusB/DsrH; COGs: COG2168 conserved hypothetical protein; InterPro IPR007215; KEGG: pau:PA14_30380 hypothetical protein; PFAM: DsrH family protein; SPTR: A3LCQ5 Putative uncharacterized protein; TIGRFAM: sulfur relay protein TusB/DsrH; PFAM: DsrH like protein; TIGRFAM: sulfur relay protein TusB/DsrH.
  
     0.416
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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