close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_0807COGs: COG3474 Cytochrome c2; InterPro IPR002327: IPR003088: IPR009056; KEGG: vpa:VPA1144 hypothetical protein; PFAM: cytochrome c class I; SPTR: A3SHJ5 Putative uncharacterized protein; PFAM: Cytochrome c. (210 aa)    
Predicted Functional Partners:
Fbal_0185
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 0.987
Fbal_3421
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
 0.981
Fbal_0808
Sulfite dehydrogenase (cytochrome) subunit SorA apoprotein; COGs: COG2041 Sulfite oxidase; InterPro IPR008335: IPR000572: IPR005066: IPR006311; KEGG: vpa:VPA1143 putative molybdenum containing oxidoreductase; PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; PRIAM: Sulfite oxidase; SPTR: A3SHJ6 Putative molybdenum containing oxidoreductase; PFAM: Mo-co oxidoreductase dimerisation domain; Oxidoreductase molybdopterin binding domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
 
 
 0.976
Fbal_3419
COGs: COG2857 Cytochrome c1; InterPro IPR002326: IPR009056; KEGG: shw:Sputw3181_0667 cytochrome c1; PFAM: cytochrome c1; SPTR: A2UUP2 Cytochrome c1; PFAM: Cytochrome C1 family.
  
 0.969
Fbal_3420
Cytochrome b/b6 domain protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.899
Fbal_0186
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
  
 0.864
Fbal_2043
COGs: COG0843 Heme/copper-type cytochrome/quinol oxidase subunit 1; InterPro IPR000883: IPR014241; KEGG: ppr:PBPRB0387 putative cytochrome c oxidase; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: A3RP05 Putative uncharacterized protein; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 0.864
Fbal_2044
COGs: COG1622 Heme/copper-type cytochrome/quinol oxidase subunit 2; InterPro IPR002429: IPR003088: IPR001505: IPR009056; KEGG: rso:RSp1564 cytochrome c oxidase polypeptide II; PFAM: cytochrome c oxidase subunit II; cytochrome c class I; SPTR: A3RP06 Cytochrome c oxidase subunit 2; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; Cytochrome c.
   
 0.856
Fbal_1903
COGs: COG3278 Cbb3-type cytochrome oxidase subunit 1; InterPro IPR000883: IPR004677; KEGG: saz:Sama_1791 cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase subunit I; PRIAM: Cytochrome-c oxidase; SPTR: A2UZN0 Cytochrome c oxidase, cbb3-type, subunit I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.796
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.766
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.