Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Fbal_1997Cupin 4 family protein; COGs: COG2850 conserved hypothetical protein; InterPro IPR013109: IPR003347; KEGG: sfr:Sfri_2263 cupin 4 family protein; PFAM: Cupin 4 family protein; SMART: transcription factor jumonji jmjC domain protein; SPTR: A2V1D8 Cupin 4; PFAM: Cupin superfamily protein. (373 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.784
hflD
Protein of unknown function DUF489; COGs: COG2915 Uncharacterized protein involved in purine metabolism; InterPro IPR007451; KEGG: shn:Shewana3_1746 hypothetical protein; PFAM: protein of unknown function DUF489; SPTR: A0KW10 UPF0274 protein Shewana3_1746; PFAM: Protein of unknown function (DUF489).
 
  
 0.732
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
     
 0.726
Fbal_1996
COGs: COG0015 Adenylosuccinate lyase; InterPro IPR000362: IPR013539: IPR020557: IPR004769; KEGG: she:Shewmr4_1601 adenylosuccinate lyase; PFAM: Adenylosuccinate lyase domain protein; fumarate lyase; SPTR: A2V1D7 Adenylosuccinate lyase; TIGRFAM: adenylosuccinate lyase; PFAM: Lyase; Adenylosuccinate lyase C-terminal; TIGRFAM: adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.713
Fbal_1992
Ribosomal large subunit pseudouridine synthase E; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR006145: IPR018496: IPR000748; KEGG: kpu:KP1_2145 pseudouridine synthase; PFAM: pseudouridine synthase; SPTR: P75966 Ribosomal large subunit pseudouridine synthase E; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase family; Belongs to the pseudouridine synthase RsuA family.
 
    0.576
argS
COGs: COG0018 Arginyl-tRNA synthetase; InterPro IPR015945: IPR005148: IPR008909: IPR001278; KEGG: tau:Tola_0472 arginyl-tRNA synthetase; PFAM: Arginyl-tRNA synthetase, class Ic, core; arginyl tRNA synthetase domain protein; DALR anticodon binding domain protein; PRIAM: Arginine--tRNA ligase; SPTR: Q6D474 Arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase.
   
    0.570
nudJ
NUDIX hydrolase; InterPro IPR020476: IPR000086: IPR020084; KEGG: swd:Swoo_2704 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q3Z2Y5 Phosphatase nudJ; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
     0.537
Fbal_1601
DoxX family protein; COGs: COG2259 membrane protein; InterPro IPR011637; KEGG: sdn:Sden_2316 DoxX; PFAM: DoxX family protein; SPTR: A3KWV5 Putative uncharacterized protein; PFAM: DoxX.
   
    0.498
Fbal_3452
Protein of unknown function DUF615; COGs: COG3028 conserved hypothetical protein; InterPro IPR006839; KEGG: tau:Tola_0261 protein of unknown function DUF615; PFAM: protein of unknown function DUF615; SPTR: Q5R0H4 UPF0307 protein IL0389; PFAM: Protein of unknown function (DUF615).
  
     0.497
queF
7-cyano-7-deazaguanine reductase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
 
    0.494
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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