STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_2016Hypothetical protein; KEGG: shl:Shal_1911 response regulator receiver protein. (494 aa)    
Predicted Functional Partners:
Fbal_2014
KEGG: saz:Sama_1848 gonadoliberin III-related protein; SPTR: A3UU39 Gonadoliberin III-related protein.
       0.788
Fbal_2015
alpha-L-glutamate ligase-like protein; InterPro IPR011758; KEGG: saz:Sama_1849 alpha-L-glutamate ligase-related protein; SPTR: A3UU38 Putative uncharacterized protein; TIGRFAM: alpha-L-glutamate ligase-like protein; TIGRFAM: alpha-L-glutamate ligase-related protein.
       0.788
Fbal_2013
Protein of unknown function DUF785; COGs: COG4067 conserved hypothetical protein; InterPro IPR008503; KEGG: shn:Shewana3_1949 hypothetical protein; PFAM: protein of unknown function DUF785; SPTR: A3H496 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF785).
       0.762
cmoB
Methyltransferase; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
  
  
 0.750
cmoA
Methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
       0.731
Fbal_2010
Diguanylate cyclase with extracellular sensor; COGs: COG2199 FOG: GGDEF domain; InterPro IPR000160: IPR001638; KEGG: she:Shewmr4_1897 diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; SMART: GGDEF domain containing protein; extracellular solute-binding protein family 3; SPTR: A2UZK4 Diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain; Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; diguanylate cyclase [...]
       0.487
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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