STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Fbal_2713Ribose-binding protein; COGs: COG1879 ABC-type sugar transport system periplasmic component; InterPro IPR001761; KEGG: vsa:VSAL_I1369 D-ribose transporter subunit RbsB; PFAM: periplasmic binding protein/LacI transcriptional regulator; SPTR: A3UMM0 Ribose ABC transporter, periplasmic D-ribose-binding protein; PFAM: family. (292 aa)    
Predicted Functional Partners:
Fbal_2714
Ribose ABC transporter membrane protein; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: aha:AHA_2311 ribose ABC transporter permease protein; PFAM: inner-membrane translocator; SPTR: A3GXP0 Ribose transport system permease protein RbsC; PFAM: Branched-chain amino acid transport system / permease component.
 0.999
rbsA
Ribose ABC transporter ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.998
rbsD
Ribose transport protein RbsD; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.992
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.949
Fbal_2970
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR013656: IPR013767: IPR003594: IPR 003660: IPR003661: IPR013655: IPR008207: IPR001789: IPR001610:I PR000014: IPR000700: IPR005467; KEGG: slo:Shew_3200 multi-sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; Hpt domain protein; response regulator receiver; SMART: ATP-binding region ATPase domain protein; response regulator recei [...]
  
 
 0.936
Fbal_3029
Multi-sensor hybrid histidine kinase; COGs: COG0591 Na+/proline symporter; InterPro IPR004358: IPR001789: IPR003594: IPR003661: IPR 000014: IPR005467: IPR001734; KEGG: sse:Ssed_3139 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein; SPTR: A0XYP5 Sensor protein; TIGRFAM: PAS sensor protein; PFAM: Response regulator receiver domain; Hist [...]
   
 
 0.931
Fbal_0840
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR008207: IPR019247: IPR001789: IPR 003594: IPR003660: IPR003661: IPR005467; KEGG: sbp:Sbal223_1223 Hpt sensor hybrid histidine kinase; PFAM: Protein of unknown function DUF2222; Hpt domain protein; response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; Hpt domain protein; histidine kinase HAMP region domain protein; ATP-binding region ATPase domain [...]
  
 
 0.930
Fbal_1435
Response regulator receiver protein; InterPro IPR001789; KEGG: rpf:Rpic12D_3921 Hpt sensor hybrid histidine kinase; PFAM: response regulator receiver; SMART: response regulator receiver; PFAM: Response regulator receiver domain.
  
 
 0.930
Fbal_1436
COGs: COG0642 Signal transduction histidine kinase; InterPro IPR004358: IPR008207: IPR001789: IPR003594: IPR 003661: IPR005467; KEGG: vch:VC1349 sensory box sensor histidine kinase/response regulator; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SPTR: A3GYU7 Sensor protein; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phos [...]
  
 
 0.930
Fbal_1643
Multi-sensor hybrid histidine kinase; COGs: COG0591 Na+/proline symporter; InterPro IPR004358: IPR001789: IPR003594: IPR001734: IPR 003661: IPR005467; KEGG: slo:Shew_1534 integral membrane sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Na+/solute symporter; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; response regulator receiver; SPTR: A2V3Y9 Sensor protein; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver doma [...]
   
 
 0.915
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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