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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_2895ErfK/YbiS/YcfS/YnhG family protein; COGs: COG3034 conserved hypothetical protein; InterPro IPR005490; KEGG: mca:MCA0637 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; SPTR: A1ZFX5 Pollen allergen Poa pIX/Phl pVI, C-terminal; PFAM: L,D-transpeptidase catalytic domain. (248 aa)    
Predicted Functional Partners:
Fbal_2689
COGs: COG3719 Ribonuclease I; InterPro IPR001568: IPR018188; KEGG: mca:MCA1293 ribonuclease T2 family protein; PFAM: ribonuclease T2; SPTR: A2V2G2 Ribonuclease T2; PFAM: Ribonuclease T2 family; Belongs to the RNase T2 family.
  
     0.611
Fbal_1808
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG1376 conserved hypothetical protein; InterPro IPR018392: IPR005490: IPR002482; KEGG: vvy:VVA0358 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; SPTR: A3ULK2 Uncharacterized protein conserved in bacteria; PFAM: L,D-transpeptidase catalytic domain.
 
  
 0.495
Fbal_2894
Short-chain dehydrogenase/reductase SDR; COGs: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; InterPro IPR002347: IPR002198: IPR013968: IPR001509; KEGG: ppr:PBPRA0143 oxidoreductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; SPTR: A2PSZ2 Oxidoreductase, short-chain dehydrogenase/reductase family; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.485
Fbal_0158
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.475
Fbal_1041
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.475
Fbal_2298
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.475
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
    0.439
Fbal_1426
Peptidoglycan-binding domain 1 protein; COGs: COG2989 conserved hypothetical protein; InterPro IPR002477: IPR005490; KEGG: asa:ASA_1213 hypothetical protein; PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; SPTR: A2UZG2 Peptidoglycan-binding domain 1; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain.
  
   
 0.420
Fbal_2354
ErfK/YbiS/YcfS/YnhG family protein; COGs: COG2989 conserved hypothetical protein; InterPro IPR002477: IPR005490; KEGG: sse:Ssed_2377 hypothetical protein; PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; SPTR: P22525 Uncharacterized protein ycbB; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain.
  
   
 0.415
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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