STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3076Conserved hypothetical protein; InterPro IPR000983: IPR012902: IPR001120; KEGG: shl:Shal_3014 hypothetical protein; SPTR: A2UWB0 Prepilin-type cleavage/methylation; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain. (183 aa)    
Predicted Functional Partners:
Fbal_3473
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004: IPR018076; KEGG: sse:Ssed_0548 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A2UWE5 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.804
Fbal_3474
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR003593; KEGG: slo:Shew_0392 type II secretion system protein E; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; SPTR: A2UWE4 Type II secretion system protein E; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
 
 
 0.801
Fbal_0215
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.770
Fbal_0216
General secretion pathway protein F; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004: IPR018076: IPR001992: IPR011850; KEGG: shn:Shewana3_0153 general secretion pathway protein F; PFAM: Type II secretion system F domain; SPTR: A2V2N8 General secretion pathway protein F; TIGRFAM: general secretion pathway protein F; PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F.
 
  
 0.764
Fbal_0221
General secretion pathway protein K; COGs: COG3156 Type II secretory pathway component PulK; InterPro IPR005628; KEGG: sfr:Sfri_0112 general secretion pathway protein K; PFAM: General secretion pathway protein K; SPTR: A2V2P3 General secretion pathway protein K; PFAM: General secretion pathway protein K.
 
 
 0.756
Fbal_0220
General secretion pathway protein J; COGs: COG4795 Type II secretory pathway component PulJ; InterPro IPR012902: IPR001120: IPR010055; KEGG: slo:Shew_3613 general secretion pathway protein J; SPTR: A2V2P2 General secretion pathway protein J; TIGRFAM: general secretion pathway protein J; PFAM: Prokaryotic N-terminal methylation motif; Pseudopilin GspJ; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; general secretion pathway protein J.
 
 
 0.746
Fbal_0363
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR001482: IPR007831: IPR013374; KEGG: saz:Sama_0369 type IV pilus biogenesis protein PilB; PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SPTR: A2UYJ9 Type IV-A pilus assembly ATPase PilB; TIGRFAM: type IV-A pilus assembly ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB.
 
 
 0.706
Fbal_0362
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR003004: IPR018076: IPR001992; KEGG: shm:Shewmr7_3606 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: A2UYK0 Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.705
Fbal_3477
Pilus (MSHA type) biogenesis protein MshL; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR001775: IPR004846: IPR011662: IPR011514: IPR 004845: IPR013358; KEGG: slo:Shew_0389 pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; Secretin/TonB short domain; Secretin domain protein; SPTR: A2UWE1 Pilus (MSHA type) biogenesis protein MshL; TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: Secretin N-terminal domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein; TIGRFAM: pilus ( [...]
 
  
 0.701
Fbal_0361
Type 4 prepilin peptidase 1; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.680
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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