STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3156Hypothetical protein; InterPro IPR006626; KEGG: mca:MCA0765 hypothetical protein; SPTR: A3U9E0 Probable extracellular nuclease. (456 aa)    
Predicted Functional Partners:
Fbal_1545
SCP-like extracellular; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR014044; KEGG: gem:GM21_3057 SCP-like extracellular; PFAM: SCP-like extracellular; SPTR: A0ZGN2 Putative uncharacterized protein; PFAM: Cysteine-rich secretory protein family.
  
    0.597
Fbal_2464
Lipolytic protein G-D-S-L family; InterPro IPR001087; KEGG: bac:BamMC406_0148 hypothetical protein; PFAM: lipolytic protein G-D-S-L family; SPTR: A3LEK1 Putative uncharacterized protein; PFAM: GDSL-like Lipase/Acylhydrolase.
   
 
 0.525
Fbal_2570
COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: shw:Sputw3181_1616 arylesterase; PFAM: lipolytic protein G-D-S-L family; PRIAM: Lysophospholipase; SPTR: A2V5P2 Lipolytic enzyme, G-D-S-L; PFAM: GDSL-like Lipase/Acylhydrolase.
   
 
 0.525
Fbal_2958
Lipolytic protein G-D-S-L family; COGs: COG2755 Lysophospholipase L1 and related esterase; InterPro IPR001087; KEGG: swd:Swoo_3734 GDSL family lipase; PFAM: lipolytic protein G-D-S-L family; SPTR: A0Y896 Lipase; PFAM: GDSL-like Lipase/Acylhydrolase.
   
 
 0.525
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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