STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3203Exonuclease RNase T and DNA polymerase III; InterPro IPR013520: IPR006055; KEGG: vfm:VFMJ11_1607 exonuclease KapD; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; SPTR: A3GWS1 Putative uncharacterized protein; PFAM: Exonuclease. (196 aa)    
Predicted Functional Partners:
Fbal_3202
Succinylglutamate desuccinylase/aspartoacylase; COGs: COG3608 deacylase; InterPro IPR007036; KEGG: vvy:VVA0557 deacylase; PFAM: Succinylglutamate desuccinylase/aspartoacylase; SPTR: A3UL70 Putative succinate dehydrogenase subunit Sdh; PFAM: Succinylglutamate desuccinylase / Aspartoacylase family.
 
     0.813
Fbal_0429
Ricin B lectin; COGs: COG3240 Phospholipase/lecithinase/hemolysin; InterPro IPR000772: IPR003367: IPR001087; KEGG: saz:Sama_1102 ATPase; PFAM: Ricin B lectin; Thrombospondin type 3 repeat; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; SPTR: A0YMB1 Putative uncharacterized protein; PFAM: Ricin-type beta-trefoil lectin domain.
  
     0.759
Fbal_1361
Decaheme c-type cytochrome, OmcA/MtrC family; InterPro IPR009056: IPR011031: IPR020014; KEGG: shl:Shal_2782 hypothetical protein; SPTR: A2V0Y9 Putative uncharacterized protein; TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family; TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family.
  
     0.753
Fbal_0660
Sporulation domain protein; InterPro IPR007730; KEGG: spl:Spea_0613 hypothetical protein; PFAM: Sporulation domain protein; SPTR: A3J961 Putative uncharacterized protein; PFAM: Sporulation related domain.
  
     0.750
Fbal_0588
Transcriptional regulator, TetR family; InterPro IPR001647; KEGG: sse:Ssed_0233 hypothetical protein; PFAM: regulatory protein TetR; SPTR: A2UXH6 Transcriptional regulator, TetR family; PFAM: Bacterial regulatory proteins, tetR family.
  
     0.747
Fbal_3075
InterPro IPR000014; KEGG: saz:Sama_2746 sensory box protein, putative; SMART: PAS domain containing protein; SPTR: A2UWZ8 Sensory box protein, putative; TIGRFAM: PAS domain S-box.
  
     0.745
Fbal_3095
InterPro IPR011031; KEGG: shl:Shal_3689 hypothetical protein; SPTR: A0YU29 Putative uncharacterized protein.
  
     0.744
Fbal_0263
Kelch repeat protein; InterPro IPR011498: IPR006652; KEGG: actin binding protein; K10442 kelch-like protein 1/4/5; PFAM: Kelch repeat protein; Kelch repeat-containing protein; SMART: Kelch repeat-containing protein; SPTR: A9A4Q1 Kelch repeat protein; PFAM: Kelch motif.
  
     0.732
Fbal_1837
Hypothetical protein; KEGG: ppd:Ppro_3565 phage integrase family protein; PFAM: Phage integrase family.
  
     0.730
Fbal_2999
KEGG: spl:Spea_0319 hypothetical protein; SPTR: A3H0X6 Putative uncharacterized protein.
  
     0.724
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.