STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_32072'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (185 aa)    
Predicted Functional Partners:
Fbal_3206
ATP-dependent helicase HrpB; COGs: COG1643 HrpA-like helicase; InterPro IPR007502: IPR011545: IPR001650: IPR013689: IPR 014001: IPR014021: IPR002464: IPR010225; KEGG: saz:Sama_2972 ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: A2UWN7 ATP-dependent helicase HrpB; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-te [...]
       0.589
Fbal_3205
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits).
       0.576
bioD
Dethiobiotin synthase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring.
  
  
 0.554
Fbal_0500
KEGG: mmb:Mmol_1131 hypothetical protein.
  
     0.529
Fbal_0307
Competence/damage-inducible protein cinA; COGs: COG1058 nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; InterPro IPR001453: IPR008136: IPR008135; KEGG: swd:Swoo_0325 competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; SPTR: B1KNC9 CinA-like protein; TIGRFAM: competence/damage-inducible protein CinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum [...]
     
 0.476
nudJ
NUDIX hydrolase; InterPro IPR020476: IPR000086: IPR020084; KEGG: swd:Swoo_2704 NUDIX hydrolase; PFAM: NUDIX hydrolase; SPTR: Q3Z2Y5 Phosphatase nudJ; PFAM: NUDIX domain; Belongs to the Nudix hydrolase family. NudJ subfamily.
 
    0.466
Fbal_0520
Protein of unknown function DUF2065; InterPro IPR019201; KEGG: swd:Swoo_4220 hypothetical protein; PFAM: Protein of unknown function DUF2065; SPTR: A2V287 Putative uncharacterized protein; PFAM: Uncharacterized protein conserved in bacteria (DUF2065).
  
     0.423
Fbal_0617
Protein of unknown function DUF903; InterPro IPR010305; KEGG: vha:VIBHAR_05819 hypothetical protein; PFAM: protein of unknown function DUF903; SPTR: P65297 Uncharacterized lipoprotein ygdR; PFAM: Bacterial protein of unknown function (DUF903).
  
     0.411
Fbal_2823
Invasion gene expression up-regulator SirB; COGs: COG3094 conserved hypothetical protein; InterPro IPR007360; KEGG: sse:Ssed_3453 invasion gene expression up-regulator, SirB; PFAM: Invasion gene expression up-regulator SirB; SPTR: A2UWS3 Invasion gene expression up-regulator, SirB; PFAM: Invasion gene expression up-regulator, SirB.
  
     0.411
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.