Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Fbal_3232COGs: COG0607 Rhodanese-related sulfurtransferase; InterPro IPR001763; KEGG: sse:Ssed_4079 hypothetical protein; SMART: Rhodanese domain protein; SPTR: A9A1J2 Rhodanese domain protein; PFAM: Rhodanese-like domain. (154 aa)    
Predicted Functional Partners:
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.552
Fbal_1737
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.543
Fbal_0682
Aminotransferase class V; COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR001279: IPR000192: IPR020578: IPR001763; KEGG: slo:Shew_3354 aminotransferase, class V; PFAM: aminotransferase class V; beta-lactamase domain protein; SPTR: A0Y022 Putative enzyme of the cysteine desulfurase family, metallo-beta-lactamase superfamily protein; PFAM: Rhodanese-like domain; Aminotransferase class-V.
  
 
 0.489
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.475
Fbal_1451
COGs: COG2116 Formate/nitrite family of transporter; InterPro IPR000292: IPR000644; KEGG: swd:Swoo_2880 formate/nitrite transporter; PFAM: formate/nitrite transporter; CBS domain containing protein; SPTR: A3UXK8 CBS domain protein; TIGRFAM: formate/nitrite transporter; PFAM: CBS domain; Formate/nitrite transporter; TIGRFAM: formate/nitrite transporter.
    
   0.448
rplQ
COGs: COG0203 Ribosomal protein L17; InterPro IPR000456; KEGG: ilo:IL1890 50S ribosomal protein L17; PFAM: ribosomal protein L17; SPTR: Q5QXV0 50S ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17.
  
   0.434
rplM
LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
   0.415
rplU
LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
   0.414
rplC
LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.
   
   0.408
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
   
   0.403
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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