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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3333Porin Gram-negative type; COGs: COG3203 Outer membrane protein (porin); InterPro IPR001702; KEGG: shl:Shal_0677 porin; PFAM: porin Gram-negative type; SPTR: A2V4M7 Porin, Gram-negative type; PFAM: Gram-negative porin. (339 aa)    
Predicted Functional Partners:
Fbal_2525
Hypothetical protein; KEGG: spl:Spea_4101 Ig domain-containing protein; SPTR: A2V1F4 Ig-like, group 1.
  
     0.675
Fbal_3312
KEGG: sde:Sde_2088 hypothetical protein; SPTR: A0YDJ1 Putative uncharacterized protein.
  
   0.625
Fbal_1094
KEGG: cps:CPS_0927 hypothetical protein; SPTR: A2V3D3 Putative uncharacterized protein; PFAM: Surface antigen.
  
    0.616
Fbal_2513
KEGG: swd:Swoo_1810 hypothetical protein; SPTR: A2V1Z8 Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2803).
  
     0.606
Fbal_1064
VacJ family lipoprotein; COGs: COG2853 Surface lipoprotein; InterPro IPR007428; KEGG: shl:Shal_1477 VacJ family lipoprotein; PFAM: VacJ family lipoprotein; SPTR: A2UZ07 VacJ-like lipoprotein; PFAM: VacJ like lipoprotein.
   
 
 0.602
Fbal_0882
VanZ family protein; InterPro IPR006976; KEGG: sdn:Sden_0769 hypothetical protein; PFAM: VanZ family protein; SPTR: A2UWT4 VanZ like protein; PFAM: VanZ like family.
  
     0.597
Fbal_2927
COGs: COG1629 Outer membrane receptor protein mostly Fe transport; InterPro IPR012910: IPR000531: IPR010104; KEGG: sbm:Shew185_1136 TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; SPTR: A2V013 TonB-dependent receptor; TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent receptor.
  
     0.588
Fbal_3288
KEGG: swp:swp_0739 hypothetical protein; SPTR: A2V564 Putative uncharacterized protein.
  
   0.583
Fbal_1448
KEGG: saz:Sama_2659 hypothetical protein; SPTR: A0Y2T4 Putative orphan protein.
  
     0.582
Fbal_0490
KEGG: dps:DP1297 hypothetical protein; SPTR: A0XZN4 Putative uncharacterized protein.
  
     0.563
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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