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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3364Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family. (270 aa)    
Predicted Functional Partners:
Fbal_3363
ApaG domain protein; COGs: COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport; InterPro IPR007474; KEGG: swp:swp_4088 ApaG protein; PFAM: ApaG domain protein; SPTR: B8CSX6 Protein apaG; PFAM: Protein of unknown function (DUF525).
  
  
 0.972
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.931
Fbal_0119
OmpA/MotB domain protein; COGs: COG2319 FOG: WD40 repeat; InterPro IPR006664: IPR020472: IPR006665: IPR005532: IPR 019781: IPR001680: IPR019775: IPR019782: IPR017986; KEGG: dal:Dalk_2629 protein of unknown function DUF323; PFAM: OmpA/MotB domain protein; protein of unknown function DUF323; WD40 repeat, subgroup; SMART: WD-40 repeat protein; SPTR: B8LTB2 Pfs, NACHT and WD domain protein; PFAM: Formylglycine-generating sulfatase enzyme; WD domain, G-beta repeat; OmpA family.
   
 0.904
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase; Catalyzes the NAD(P)-dependent oxidation of 4-(phosphooxy)-L- threonine (HTP) into 2-amino-3-oxo-4-(phosphooxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP).
  
  
 0.882
surA
Peptidylprolyl isomerase; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.
 
 
 0.875
Fbal_3017
Putative endonuclease, Z1 domain protein; InterPro IPR018310: IPR005479; KEGG: sfu:Sfum_1320 hypothetical protein; PFAM: Putative endonuclease, Z1 domain; SPTR: A3TJJ6 Endonuclease; PFAM: Z1 domain.
   
 0.873
menH
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carbox ylatesynthase; Catalyzes a proton abstraction reaction that results in 2,5- elimination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC) and the formation of 2-succinyl-6- hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC).
    
  0.768
bioH
Carboxylesterase BioH (pimeloyl-CoA synthesis); The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.
    
  0.768
Fbal_0231
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: sfr:Sfri_3624 alpha/beta hydrolase fold; PFAM: alpha/beta hydrolase fold; SPTR: A0Y5R6 Hydrolase, alpha/beta fold family protein; PFAM: alpha/beta hydrolase fold.
    
  0.768
Fbal_0748
Acyltransferase, WS/DGAT/MGAT; InterPro IPR004255: IPR014292; KEGG: ppr:PBPRA2215 hypothetical protein; PFAM: protein of unknown function UPF0089; SPTR: A2VMB4 Putative uncharacterized protein; TIGRFAM: acyltransferase, WS/DGAT/MGAT; PFAM: Protein of unknown function (DUF1298); Uncharacterised protein family (UPF0089); TIGRFAM: acyltransferase, WS/DGAT/MGAT.
    
  0.768
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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