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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Fbal_3591Formate dehydrogenase region TAT target; InterPro IPR006311: IPR014177; KEGG: saz:Sama_3614 hypothetical protein; TIGRFAM: formate dehydrogenase region TAT target; TIGRFAM: formate dehydrogenase region TAT target; Tat (twin-arginine translocation) pathway signal sequence. (64 aa)    
Predicted Functional Partners:
Fbal_3590
Formate dehydrogenase alpha subunit; COGs: COG0243 Anaerobic dehydrogenase typically selenocysteine-containing; InterPro IPR006656: IPR006963: IPR006657: IPR019546: IPR 006655: IPR017871: IPR006311; KEGG: saz:Sama_3613 formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; Twin-arginine translocation pathway, signal sequence, subgroup; SPTR: A2V3M7 Twin-arginine translocation pathway signal; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin o [...]
       0.775
Fbal_3589
4Fe-4S ferredoxin iron-sulfur binding domain protein; COGs: COG0437 Fe-S-cluster-containing hydrogenase components 1; InterPro IPR000813: IPR001450: IPR017900; KEGG: vvy:VV1699 formate dehydrogenase, iron-sulfur subunit; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A3H0Z0 Formate dehydrogenase-O iron-sulfur subunit; PFAM: 4Fe-4S binding domain.
       0.744
Fbal_3588
COGs: COG2864 Cytochrome b subunit of formate dehydrogenase; InterPro IPR006471; KEGG: saz:Sama_3607 formate dehydrogenase, C subunit, putative; SPTR: A2V3N3 Formate dehydrogenase, gamma subunit; TIGRFAM: formate dehydrogenase, gamma subunit; PFAM: Cytochrome b(N-terminal)/b6/petB; TIGRFAM: formate dehydrogenase, gamma subunit.
       0.708
Fbal_3592
Cytoplasmic chaperone TorD family protein; COGs: COG3381 Uncharacterized component of anaerobic dehydrogenase; InterPro IPR010395; KEGG: spl:Spea_4139 cytoplasmic chaperone TorD family protein; PFAM: cytoplasmic chaperone TorD family protein; SPTR: A2V3M5 Cytoplasmic chaperone TorD; PFAM: Nitrate reductase delta subunit.
       0.536
Fbal_3593
InterPro IPR001450: IPR017900; KEGG: slo:Shew_0056 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; SPTR: A2V3M4 4Fe-4S ferredoxin, iron-sulfur binding.
       0.526
Your Current Organism:
Ferrimonas balearica
NCBI taxonomy Id: 550540
Other names: F. balearica DSM 9799, Ferrimonas balearica DSM 9799, Ferrimonas balearica PAT, Ferrimonas balearica str. DSM 9799, Ferrimonas balearica strain DSM 9799
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