STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQP56411.1alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (910 aa)    
Predicted Functional Partners:
OQP63622.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.707
OQP51907.1
His-Xaa-Ser system radical SAM maturase HxsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.663
OQP60254.1
Glucose-1-phosphate adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.621
OQP66186.1
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
     0.574
OQP67618.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.563
OQP67602.1
alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
OQP63621.1
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose.
 
    0.522
OQP57594.1
Daunorubicin C-13 ketoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.512
OQP59798.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.508
OQP57413.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
Your Current Organism:
Niastella populi
NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.