STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQP59855.1Alpha-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1264 aa)    
Predicted Functional Partners:
OQP59854.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.873
OQP59851.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
 
    0.757
OQP59798.1
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.748
OQP59812.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.735
OQP59815.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.735
OQP59811.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.697
OQP59804.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.666
OQP59805.1
Acetylxylan esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.626
OQP57413.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.605
OQP59807.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.580
Your Current Organism:
Niastella populi
NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.