STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OQP57609.1TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (752 aa)    
Predicted Functional Partners:
OQP57574.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.948
OQP57575.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.933
OQP57578.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.896
OQP57577.1
Alginate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.870
OQP57579.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.867
OQP57573.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.854
OQP57570.1
SusC/RagA family TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.781
OQP57571.1
Carbohydrate-binding protein SusD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
OQP57576.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.678
OQP58375.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.626
Your Current Organism:
Niastella populi
NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44
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