STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000378345_01558Unannotated protein. (880 aa)    
Predicted Functional Partners:
GCA_000378345_01560
Unannotated protein.
 
     0.758
GCA_000378345_02953
Unannotated protein.
  
  
  0.756
GCA_000378345_02950
Unannotated protein.
  
  
  0.740
GCA_000378345_01619
Unannotated protein.
  
 
  0.736
GCA_000378345_00160
Unannotated protein.
  
  
  0.724
GCA_000378345_00312
Unannotated protein.
     
 0.714
GCA_000378345_00868
Unannotated protein.
     
 0.714
GCA_000378345_01860
Unannotated protein.
  
 
  0.707
GCA_000378345_02551
Unannotated protein.
  
 
  0.685
GCA_000378345_03052
Unannotated protein.
  
  
 
0.674
Your Current Organism:
Hirschia maritima
NCBI taxonomy Id: 551275
Other names: H. maritima DSM 19733, Hirschia maritima DSM 19733, Hirschia sp. GSW-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.